BGPT: Create Graphs: From Koedoot 2021 TNBC splicing screen pipeline schematic flowchart

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Create Graphs: Koedoot 2021 TNBC splicing screen pipeline schematic flowchart

I can’t yet generate an accurate, paper-grounded pipeline flowchart/graphs because the request references Koedoot 2021 without providing the paper DOI/title or the pipeline figure/text needed to (1) avoid speculation and (2) meet your requirement that every claim must be inline-cited in the specified citation format.

What I need from you (pick one)

Send the DOI or full title of the “Koedoot 2021” TNBC splicing screen paper.
Or upload the PDF / the pipeline schematic figure image(s).
Or paste the Methods section that describes the splicing-screen pipeline steps, controls, mapping/quantification, and hit-calling.

Once you provide that, I will generate (as graphs)

A schematic flowchart (graph) of the end-to-end TNBC splicing screen workflow.
Stage-wise data products (e.g., reads → splice quantification → differential/splicing-event scoring → QC → hits).
QC/controls and where they are applied in the pipeline.
A hit-calling logic diagram (criteria, thresholds, and uncertainty notes explicitly from the paper).
All steps inline-cited using your required <citation ...> format.

Scientific humility: Without the exact paper content, any “pipeline schematic” would risk inventing or mis-stating experimental and computational steps—especially critical for splicing screens where mapping/annotation versions, QC thresholds, and scoring definitions materially change interpretation.