Why BGPT?
logo

Genomics β€” Raw Sequence & Results

Find sequence data, variant calls, and experimental results extracted from full texts.

Press Enter ↡ to search



    Fuel Your Discoveries




     Long Response



    DRT10 9-nt motif repeat visualizations β€” data-driven figures

    Visuals recreated from the reported experimental metrics in the DRT10 study (Eco 3 DRT10). All claims are cited inline beneath each figure. Visualize-first, brief explanation after.

    Figure 1 β€” Fraction of unmapped reads containing the 9-nt motif (WT vs YVAA)

    Reported values: motif present in 5.9% of unmapped reads for WT and 0.13% for catalytically inactive (YVAA) control; data from n = 2 biological replicates (miniprep-seq) and described in the paper's motif-discovery panel.

    Source:

    Figure 2 β€” Distribution of longest continuous 9-nt motif repeats per read (miniprep-seq)

    The paper reports the median of this distribution is 15 repeats, with 16 repeats being the maximum possible per 150-nt sequencing read (because 16 Γ— 9 nt = 144 nt fits within 150 nt read length). The histogram here re-synthesizes that distribution shape anchored to the reported median and maximum for faithful reproduction of the key experimental observation (tandem-concatemeric nature of DRT10 cDNAs).

    Source:

    Figure 3 β€” Motif position visualization (schematic with explanation)

    The original paper presents "motif position graphs" that show where motif repeats lie across miniprep-seq reads (normalized as counts per million plasmid-mapping reads). Here we present a schematic re-creation that shows motif density concentrated across the same read-length span consistent with long tandem concatemers; the original plotted per-base (or per-window) counts per million and contrasted WT vs YVAA and NC mutants β€” consult the cited panel for exact per-base traces.

    Source and more complete per-position traces:

    Interpretation (short):

    Taken together the reported statistics (motif enrichment in WT vs inactive RT, the long-repeat histogram with median = 15 repeats and max = 16 per 150-nt read, and dense motif position signals across reads) indicate that Eco 3 DRT10 RT synthesizes long tandem 9-nt repeat cDNAs in a highly processive, template-directed manner β€” analogous mechanistically to telomerase repeat-addition processivity described by the authors. These are the exact experimental observations reported; see the cited panels for full per-sample traces and mutant comparisons.

    Key caveats: visual panels here reproduce and summarize reported metrics only β€” per-base per-sample counts and per-replicate variability are reported in the original preprint figures (miniprep-seq motif-position graphs, mutant panels) and should be consulted for precise numeric comparisons and statistical tests; raw sequencing counts and underlying read-level coordinates are available from the authors/SRA as indicated in the paper.

    Cited primary source for all plotted experimental numbers:


    Reproducibility & data access: The underlying sequencing datasets and processed analyses are reported in the preprint; consult SRA / the corresponding author for raw miniprep-seq counts and read coordinates to reproduce per-base motif-position plots exactly. All plotted numbers and assertions above are taken from the cited primary source.


    Feedback:   

    Updated: January 16, 2026

     Top Data Sources ExportMCP



     Analysis Wizard



    Will parse per-read motif hit tables and generate per-read position matrices, compute CPM-normalized motif-position profiles, and produce publication-ready plots and statistics from the study's miniprep-seq raw data.



     Science Art


    Create Graphs: Visualize DRT10 motif repeat data Science Art

     Science Movie



    Make a narrated HD Science movie for this answer ($32 per minute)




     Discussion


    Get Ahead With Science Insights

    Custom summaries of the latest cutting-edge research. Every Friday. No ads.


    My BGPT