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     Long Response


    Author Publication Audit

    This audit organizes the supplied publications into a compact, interactive table (sortable, searchable) to support authorship, year, DOI, source, short extract, and evidence strength. Each publication row links to a full inline citation with a detailed research extract for transparency. Use the table to inspect author lists, year trends, and to export records for reporting or reproducibility checks.

    Notes on scope and limitations
    • This audit includes only the supplied publications and metadata present in the dataset you provided; it is not exhaustive of the literature in any field.
    • Evidence strength is assigned conservatively from available metadata (publication type, journal, and abstract). It does not replace formal quality appraisal.
    Index First Author Full Title Year DOI Source Short Research Extract Evidence Strength
    1 Miller Building a Safe and Transparent Workflow for Large Language Model LLM-Assisted Clinical Trials and Prediction Models 2025 10.7759/cureus.92571 Cureus Technical Report Proposes a seven step workflow (scope, retrieval augmented review, benchmarking, audit trail, expert gates, disclosure, privacy) and provides reusable checklists mapping to CONSORT-AI SPIRIT-AI TRIPOD+AI and PRISMA to support LLM use in clinical research while preserving transparency and auditability. Moderate
    2 Sturm The Italian Portrait of Laboratory Information Systems in Pathology The Ones We Have and the Ones We Would Like 2025 10.3390/jpm15110517 Journal of Personalized Medicine Comparative analysis of three LIS platforms in Italian pathology with evaluation of integration, digital reporting, traceability, and compliance to standards such as GDPR and ISO 15189; highlights tradeoffs across Armonia, Pathox Web, and WinSAP 3.0. Moderate
    3 Raine Automated data collection from an electronic medical record for a prospective real-world study in patients with retinal disease VOYAGER 2025 10.1177/17407745251358235 Clinical Trials Journal Pilot EMR-to-EDC integration prepopulated many eCRF fields, reduced queries, and saved estimated staff time; shows feasibility and operational benefits while noting pull-through of irrelevant data as a challenge. Moderate
    4 Hirsch Safeguarding Open Science from exploitative practices 2025 10.1371/journal.pmed.1004851 PLOS Medicine Argues that open science must include safeguards because freely available data can be exploited; recommends practical governance and technical controls to reduce integrity risks from open sharing. Strong
    5 Rocca Identifying genomic data use with the Data Citation Explorer 2024 10.1038/s41597-024-04049-7 Scientific Data Describes the Data Citation Explorer (DCE) to automatically discover literature that used genomic data without formal citation; shows improved coverage and metadata enrichment compared to manual curation and benefits for data generators. Strong
    6 Meyer The Advanced Confidentiality Engine as a Scalable Tool for the Pseudonymization of Biomedical Data in Translational Settings Development and Usability Study 2025 10.2196/71822 Journal of Medical Internet Research Introduces ACE an open source pseudonymization service supporting multiple algorithms, fine-grained access control, domain structuring, audit trail and throughput experiments demonstrating ~6000 transactions/sec under tested workloads. Strong
    7 Zarei A NoSQL document based eCRF system for study of vaccines with variable adverse events case study on COVID19 vaccines 2025 10.1038/s41598-025-05746-y Scientific Reports Proposes a document oriented eCRF for variable adverse event reporting in vaccine studies; compares performance with relational models and reports improved response time and flexibility for unstructured case report data. Moderate
    8 Various Data and methods papers and selected database/dataset entries (selected examples) 2016-2025 N A BioStudies and others Includes BioStudies dataset E GEOD 83275 (table grapes transcript profiling) demonstrating how dataset metadata can be surfaced; see dataset link for experiment-level details and files. Weak to Moderate

    Citations and detailed research extracts

    Quick audit actions you can take
    • Export the table CSV from the DataTables control for external recordkeeping or merging with institutional bibliographies.
    • Use the DOI column to fetch full metadata and cross check author affiliations and funding declarations for COI audits.
    • Mark records for deeper quality appraisal (risk of bias, sample size, funding sources) to refine evidence strength grading.


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    Updated: December 16, 2025

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    Preparing code to parse CSV bibliographies, query DOI metadata, and append structured fields (authors affiliations funding COI) for automated audit enrichment using the supplied publication DOIs and dataset E GEOD 83275.



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